Asian seabass transcriptome

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  • Transcriptome dataset used as reference for RNA-seq experiment; obtained by assigning one Asian seabass sequence for every Nile tilapia RefSeq sequence (below), by selecting the sequence with the highest percentage aligned length:
    ASB_rnaseq_reference_22022.fasta

  • The Nile tilapia RefSeq protein dataset (downloaded in Oct 2013 and filtered for redundancy);
    this dataset was used for annotating the Asian seabass transcriptome:
    NT_RefSeqProtein_filtered.fasta

Publication
Thevasagayam, N.M.; Sridatta, P.S.; Jiang, J.; Tong, A.; Saju, J.M.; Kathiresan, P.; Kwan, H.Y.; Ngoh, S.Y.; Liew, W.C.; Kuznetsova, I.S.; Shen, X.; Lok, S.; Vij, S.; Orban, L. Transcriptome Survey of a Marine Food Fish: Asian Seabass (Lates calcarifer). J. Mar. Sci. Eng. 2015, 3, 382-400. (Link)